Publications

(*): Co-first authorship, (+): Co-second authorship

2025

  1. TITAN_preview.jpg
    A multimodal whole-slide foundation model for pathology
    Tong Ding*, Sophia J Wagner*, Andrew H Song*, Richard J Chen*, Ming Y Lu, Andrew Zhang, Anurag J Vaidya, Guillaume Jaume, and 3 more authors
    Nature Medicine, 2025
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  2. BKvirus.png
    Automated Detection of BK Virus in H&E Whole-Slide Images Using Weakly-Supervised Deep Learning and Interpretable Morphological Biomarkers
    Sharifa Sahai*, Ana D Ramos-Guerra*, Cristina Almagro-Pérez, Guillaume Jaume, Andrew Zhang, Helmut Rennke, Astrid Weins, Juan E Ortuño, and 2 more authors
    In International Conference on Medical Image Computing and Computer-Assisted Intervention , 2025
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2024

  1. hest.jpeg
    Hest-1k: A dataset for spatial transcriptomics and histology image analysis
    Guillaume Jaume*, Paul Doucet*, Andrew H Song, Ming Y Lu, Cristina Almagro-Pérez, Sophia J Wagner, Anurag J Vaidya, Richard J Chen, and 3 more authors
    In The Thirty-eight Conference on Neural Information Processing Systems Datasets and Benchmarks Track , 2024
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  2. nature_gen2.png
    3D genomic mapping reveals multifocality of human pancreatic precancers
    Alicia M Braxton, Ashley L Kiemen, Mia P Grahn, André Forjaz, Jeeun Parksong, Jaanvi Mahesh Babu, Jiaying Lai, Lily Zheng, and 37 more authors
    Nature, 2024
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2023

  1. tissue_clearing_med.png
    Tissue clearing and 3D reconstruction of digitized, serially sectioned slides provide novel insights into pancreatic cancer
    Ashley L Kiemen, Alexander Ioannis Damanakis, Alicia M Braxton, Jin He, Daniel Laheru, Elliot K Fishman, Patrick Chames, Cristina Almagro-Pérez, and 3 more authors
    Med, 2023
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  2. intraparenchymal.png
    Intraparenchymal metastases as a cause for local recurrence of pancreatic cancer
    Ashley L Kiemen, YoungGeun Choi, Alicia M Braxton, Cristina Almagro-Pérez, Sarah Graham, Mia P Grahn, Neha Nanda, Nicholas Roberts, and 3 more authors
    Histopathology, 2023
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